Preheat oven to 350°F (180°C). Line a 13x9-inch baking pan with foil, letting excess extend over the sides. Spray the foil with baking spray with flour.
Make the crust: In the bowl of a stand mixer fitted with the paddle attachment, beat 1 cup (227 grams) unsalted butter (softened) and the ?cup (147 grams) firmly packed light brown sugar at medium speed until creamy, about 2 to 3 minutes, stopping once to scrape the bowl.
With the mixer on low, add 2 cups (250 grams) all-purpose flour and ½ teaspoon (1.5 grams) kosher salt and beat just until combined. Press the mixture evenly into the bottom of the prepared pan.
Bake the crust until golden brown, about 20 minutes. Remove from the oven and let the crust cool completely in the pan. Leave the oven on.
Meanwhile, prepare the apples: In a large bowl, stir together 8 cups (900 grams) finely diced peeled Honeycrisp or Pink Lady apples, ½ cup (100 grams) of the granulated sugar, 1 teaspoon (2 grams) of the ground cinnamon, and ½ teaspoon (1 gram) ground nutmeg. Let the mixture stand, uncovered, until the apples have released most of their juices, about 45 minutes to 1 hour.
Drain the apples in a colander, pressing gently with a spoon to remove excess liquid. Discard the liquid and set the drained apple mixture aside.
Make the cheesecake filling: In the stand mixer bowl fitted with the paddle attachment, beat 3 (8-ounce) packages (680 grams) cream cheese (softened), 3 large eggs (150 grams), 2 teaspoons (6 grams) vanilla extract, and the remaining ¾ cup (150 grams) granulated sugar at medium-high speed until smooth and well combined, about 2 to 3 minutes. Scrape the bowl as needed.
Pour the cream cheese mixture evenly over the cooled crust. Gently spread the drained apple mixture over the cream cheese layer.
Make the crumb topping: In a medium bowl, whisk together 1 cup (125 grams) all-purpose flour, ¾ cup (165 grams) firmly packed light brown sugar, ½ cup (50 grams) old-fashioned oats, ½ teaspoon (1.5 grams) kosher salt, and the remaining ½ teaspoon (1 gram) ground cinnamon.
Cut in ½ cup (113 grams) unsalted butter (softened) with a pastry blender, fork, or two knives until the mixture resembles coarse crumbs. Stir in ¾ cup (85 grams) chopped pecans.
Sprinkle the crumb mixture evenly over the apples.
Bake until the center is set and an instant-read thermometer inserted into the center registers 160°F (71°C), about 45 minutes. Remove from the oven and cool completely in the pan on a wire rack.
Refrigerate the cooled bars, uncovered, until thoroughly cold, at least 8 hours or overnight.
Use the foil overhang to lift the bars from the pan. Cut into bars and serve with Salted Caramel Sauce.